Note that this wiki, which is just an online version of the PhysiCell user guide, is still in its infancy. Daniel Mishler is the primary developer of this wiki and you should send all questions and comments to him.

Introduction and citing PhysiCell


Getting started: The Quickstart and your First Simulation

Further resources for help

Preparing your development environment


Overall codebase structure

Using project templates

Using the Sample Projects

The BioFVM microenvironment

Cells

Phenotype

Phenotype details

Cell Containers

PhysiCell Inputs

PhysiCell Outputs

Key initialization functions

Key global data structures

Standard models

Future

Some notes on parameter values

Acknowledgements

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