Best python library for training using Hidden Marov model with Gaussian Mixture

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I would like to train my data using HMM- GMM (Baum Welch approach with gaussian Mixture) to find the best parameters suited for my data.

Note : My data is continuous and not discrete.

I tried with hmmlearn from scikit learn, but i believe it is not supporting continuous HMM-GMM model, but i tried with discrete data, it woks fine.

I tried to use pomegranate, but i cannot able to understand the document, also i am not sure whether it uses GMM to fit my data.

I try to install hmms libraray, but i receive an error while installing,

Command "python setup.py egg_info" failed with error code 1 in C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\

Collecting hmms
  Using cached https://files.pythonhosted.org/packages/e9/e4/c070c44ec8a391f6d5501316d1ed7615058f1fd365ff4ed65c9636d0bf62/hmms-0.1.tar.gz
    Complete output from command python setup.py egg_info:
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "C:\Users\eponr\AppData\Local\Temp\pycharm-packaging\hmms\setup.py", line 22, in <module>
        ext_modules=cythonize(glob.glob('hmms/*.pyx'), language_level=3, include_dirs=[numpy.get_include()]),
      File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Build\Dependencies.py", line 955, in cythonize
        c_options = CompilationOptions(**options)
      File "C:\Users\eponr\PycharmProjects\untitled1\venv\lib\site-packages\Cython\Compiler\Main.py", line 563, in __init__
        raise ValueError(message)
    ValueError: got unknown compilation option, please remove: include_dirs

Kindly suggest some libraries in python, which describes my problem ?

Mari

Posted 2019-08-21T10:40:45.680

Reputation: 155

have you tried this.? https://stackoverflow.com/questions/33520619/extra-compile-args-in-cython

– IamTheRealFord – 2019-09-05T09:18:02.890

*seqlearn https://larsmans.github.io/seqlearn/reference.html

– IamTheRealFord – 2019-12-18T08:55:20.113

No answers